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High Performance Computing - Charles Severance [1]

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copies of the book from Amazon in order to have a few copies laying around the office to give as gifts to unsuspecting visitors.

Thanks the the forward-looking approach of O'Reilly and Associates to use Founder's Copyright and releasing out-of-print books under Creative Commons Attribution, this book once again rises from the ashes like the proverbial Phoenix. By bringing this book to Connexions and publishing it under a Creative Commons Attribution license we are insuring that the book is never again obsolete. We can take the core elements of the book which are still relevant and a new community of authors can add to and adapt the book as needed over time.

Publishing through Connexions also keeps the cost of printed books very low and so it will be a wise choice as a textbook for college courses in High Performance Computing. The Creative Commons Licensing and the ability to print locally can make this book available in any country and any school in the world. Like Wikipedia, those of us who use the book can become the volunteers who will help improve the book and become co-authors of the book.

I need to thank Kevin Dowd who wrote the first edition and graciously let me alter it from cover to cover in the second edition. Mike Loukides of O'Reilly was the editor of both the first and second editions and we talk from time to time about a possible future edition of the book. Mike was also instrumental in helping to release the book from O'Reilly under Creative Commons Attribution. The team at Connexions has been wonderful to work with. We share a passion for High Performance Computing and new forms of publishing so that the knowledge reaches as many people as possible. I want to thank Jan Odegard and Kathi Fletcher for encouraging, supporting and helping me through the re-publishing process. Daniel Williamson did an amazing job of converting the materials from the O'Reilly formats to the Connexions formats.

I truly look forward to seeing how far this book will go now that we can have an unlimited number of co-authors to invest and then use the book. I look forward to work with you all.

Charles Severance - November 12, 2009

Introduction to High Performance Computing


1. Why Worry About Performance?

Over the last decade, the definition of what is called high performance computing has changed dramatically. In 1988, an article appeared in the Wall Street Journal titled “Attack of the Killer Micros” that described how computing systems made up of many small inexpensive processors would soon make large supercomputers obsolete. At that time, a “personal computer” costing $3000 could perform 0.25 million floating-point operations per second, a “workstation” costing $20,000 could perform 3 million floating-point operations, and a supercomputer costing $3 million could perform 100 million floating-point operations per second. Therefore, why couldn’t we simply connect 400 personal computers together to achieve the same performance of a supercomputer for $1.2 million?

This vision has come true in some ways, but not in the way the original proponents of the “killer micro” theory envisioned. Instead, the microprocessor performance has relentlessly gained on the supercomputer performance. This has occurred for two reasons. First, there was much more technology “headroom” for improving performance in the personal computer area, whereas the supercomputers of the late 1980s were pushing the performance envelope. Also, once the supercomputer companies broke through some technical barrier, the microprocessor companies could quickly adopt the successful elements of the supercomputer designs a few short years later. The second and perhaps more important factor was the emergence of a thriving personal and business computer market with ever-increasing performance demands. Computer usage such as 3D graphics, graphical user interfaces, multimedia, and games were the driving factors in this market. With such a large market, available research dollars poured into developing inexpensive high performance processors for the home market. The

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